Starting job 2 (single sample)
	SGE: qsub -V -pe smp 10 -b y -wd /mnt/storage2/projects/diagnostic/Exome_Diagnostik/ -m n -M medgen.bioinformatik@med.uni-tuebingen.de -e /mnt/storage2/megSAP/data//sge/megSAP_sge_job_2.err -o /mnt/storage2/megSAP/data//sge/megSAP_sge_job_2.out -q default_srv011,default_srv012,default_srv013,default_srv014,default_srv015,priority_srv011,priority_srv012,priority_srv013,priority_srv014,priority_srv015,priority_srv020
	PIP: php [megSAP]/src/Pipelines/analyze.php -threads  10 -folder /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181109_01/ -name DX181109_01 --log /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181109_01/analyze_20000101000000.log
Canceling job 3 (single sample)
	Canceled: [canceled SGE job 999002]
Updating status job 4 (single sample)
	Job finished with status 'finished'
Starting job 5 (multi sample)
	SGE: qsub -V -pe smp 4 -b y -wd /mnt/storage2/projects/diagnostic/Exome_Diagnostik/ -m n -M medgen.bioinformatik@med.uni-tuebingen.de -e /mnt/storage2/megSAP/data//sge/megSAP_sge_job_5.err -o /mnt/storage2/megSAP/data//sge/megSAP_sge_job_5.out -q default_srv011,default_srv012,default_srv013,default_srv014,default_srv015,default_srv020,default_srv023
	PIP: php [megSAP]/src/Pipelines/multisample.php  -bams /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181109_01/DX181109_01.bam /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181110_01/DX181110_01.bam -status affected control -out_folder /mnt/storage2/projects/diagnostic/Exome_Diagnostik//Multi_DX181109_01_DX181110_01/ --log /mnt/storage2/projects/diagnostic/Exome_Diagnostik//Multi_DX181109_01_DX181110_01/multi.log -threads 4
Starting job 6 (trio)
	Postponed because single sample analysis of 'DX181109_01' is running
Starting job 7 (somatic)
	Postponed because single sample analysis of 'DX181109_01' is running.
Starting job 8 (single sample)
	SGE: qsub -V -pe smp 6 -b y -wd /mnt/storage2/projects/diagnostic/Exome_Diagnostik/ -m n -M medgen.bioinformatik@med.uni-tuebingen.de -e /mnt/storage2/megSAP/data//sge/megSAP_sge_job_8.err -o /mnt/storage2/megSAP/data//sge/megSAP_sge_job_8.out -q default_srv011,default_srv012,default_srv013,default_srv014,default_srv015,default_srv020,default_srv023
	PIP: php [megSAP]/src/Pipelines/analyze.php  -folder /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181116_01/ -name DX181116_01 --log /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181116_01/analyze_20000101000000.log -threads 6
Starting job 9 (single sample)
	SGE: qsub -V -pe smp 5 -b y -wd /mnt/storage2/projects/diagnostic/Exome_Diagnostik/ -m n -M medgen.bioinformatik@med.uni-tuebingen.de -e /mnt/storage2/megSAP/data//sge/megSAP_sge_job_9.err -o /mnt/storage2/megSAP/data//sge/megSAP_sge_job_9.out -q highmem_srv011,highmem_srv012,highmem_srv013,highmem_srv014,highmem_srv015,highmem_srv020,highmem_srv023
	PIP: php [megSAP]/src/Pipelines/analyze_rna.php  -folder /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181117_01/ -name DX181117_01 --log /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181117_01/analyze_rna_20000101000000.log -threads 5
Starting job 10 (trio)
	SGE: qsub -V -pe smp 4 -b y -wd /mnt/storage2/projects/diagnostic/Exome_Diagnostik/ -m n -M medgen.bioinformatik@med.uni-tuebingen.de -e /mnt/storage2/megSAP/data//sge/megSAP_sge_job_10.err -o /mnt/storage2/megSAP/data//sge/megSAP_sge_job_10.out -q default_srv011,default_srv012,default_srv013,default_srv014,default_srv015,default_srv020,default_srv023
	PIP: php [megSAP]/src/Pipelines/trio.php  -c /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181109_02/DX181109_02.bam -f /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181110_02/DX181110_02.bam -m /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181111_02/DX181111_02.bam -out_folder /mnt/storage2/projects/diagnostic/Exome_Diagnostik//Trio_DX181109_02_DX181110_02_DX181111_02/ --log /mnt/storage2/projects/diagnostic/Exome_Diagnostik//Trio_DX181109_02_DX181110_02_DX181111_02/trio.log -threads 4
Starting job 11 (single sample)
	SGE: qsub -V -pe smp 10 -b y -wd /mnt/storage2/projects/diagnostic/Exome_Diagnostik/ -m n -M medgen.bioinformatik@med.uni-tuebingen.de -e /mnt/storage2/megSAP/data//sge/megSAP_sge_job_11.err -o /mnt/storage2/megSAP/data//sge/megSAP_sge_job_11.out -q default_srv011,default_srv012,default_srv013,default_srv014,default_srv015,priority_srv011,priority_srv012,priority_srv013,priority_srv014,priority_srv015,priority_srv020
	PIP: php [megSAP]/src/Pipelines/analyze_longread.php -threads 10 -steps ma,cn,an -folder /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181116_03/ -name DX181116_03 --log /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181116_03/analyze_longread_20000101000000.log
Starting job 12 (single sample)
	SGE: qsub -V -pe smp 8 -b y -wd /mnt/storage2/projects/diagnostic/Exome_Diagnostik/ -m n -M medgen.bioinformatik@med.uni-tuebingen.de -e /mnt/storage2/megSAP/data//sge/megSAP_sge_job_12.err -o /mnt/storage2/megSAP/data//sge/megSAP_sge_job_12.out -q default_srv011,default_srv012,default_srv013,default_srv014,default_srv015,default_srv020,default_srv023
	PIP: php [megSAP]/src/Pipelines/analyze_longread.php  -folder /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181116_03/ -name DX181116_03 --log /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181116_03/analyze_longread_20000101000000.log -threads 8
Removing job 1 because it is older than 90 days.
