Updating status job 2 (single sample)
	Job finished with status 'finished'
Updating status job 5 (multi sample)
	Job finished with status 'finished'
Starting job 6 (trio)
	SGE: qsub -V -pe smp 4 -b y -wd /mnt/storage2/projects/diagnostic/Exome_Diagnostik/ -m n -M medgen.bioinformatik@med.uni-tuebingen.de -e /mnt/storage2/megSAP/data//sge/megSAP_sge_job_6.err -o /mnt/storage2/megSAP/data//sge/megSAP_sge_job_6.out -q default_srv011,default_srv012,default_srv013,default_srv014,default_srv015,default_srv020,default_srv023
	PIP: php [megSAP]/src/Pipelines/trio.php  -c /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181109_01/DX181109_01.bam -f /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181110_01/DX181110_01.bam -m /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181111_01/DX181111_01.bam -out_folder /mnt/storage2/projects/diagnostic/Exome_Diagnostik//Trio_DX181109_01_DX181110_01_DX181111_01/ --log /mnt/storage2/projects/diagnostic/Exome_Diagnostik//Trio_DX181109_01_DX181110_01_DX181111_01/trio.log -threads 4
Starting job 7 (somatic)
	SGE: qsub -V -pe smp 4 -b y -wd /mnt/storage2/projects/diagnostic/Exome_Diagnostik/ -m n -M medgen.bioinformatik@med.uni-tuebingen.de -e /mnt/storage2/megSAP/data//sge/megSAP_sge_job_7.err -o /mnt/storage2/megSAP/data//sge/megSAP_sge_job_7.out -q default_srv011,default_srv012,default_srv013,default_srv014,default_srv015,default_srv020,default_srv023
	PIP: php [megSAP]/src/Pipelines/somatic_dna.php -include_germline --log /mnt/storage2/projects/diagnostic/Exome_Diagnostik//Somatic_DX181109_01-DX181110_01/somatic_dna_20000101000000.log -out_folder /mnt/storage2/projects/diagnostic/Exome_Diagnostik//Somatic_DX181109_01-DX181110_01/ -prefix DX181109_01-DX181110_01 -t_bam /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181109_01/DX181109_01.bam -n_bam /mnt/storage2/projects/diagnostic/Exome_Diagnostik/Sample_DX181110_01/DX181110_01.bam -threads 4
Updating status job 8 (single sample)
	Job finished with status 'finished'
Updating status job 9 (single sample)
	Job finished with status 'finished'
Updating status job 10 (trio)
	Job finished with status 'finished'
Updating status job 11 (single sample)
	Job finished with status 'finished'
Updating status job 12 (single sample)
	Job finished with status 'finished'
