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 External Resources

 frontier...=falsehttps://www.frontiersin.org/journals/analytical-science/articles/10.3389/frans.2024.1425190/pdf?isPublishedV2=false  Article fulltext

 9606https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9606  NCBI taxonomy (human, Homo sapiens)

 10090https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=10090  NCBI taxonomy (mouse, Mus musculus)

 0009-0002-6441-2648https://orcid.org/0009-0002-6441-2648  ORCID identifier (Hugo Amedei)

 0000-0002-5631-0126https://orcid.org/0000-0002-5631-0126  ORCID identifier (Niels Benjamin Paul)

 0009-0004-1361-0382https://orcid.org/0009-0004-1361-0382  ORCID identifier (Brian Foo)

 0000-0002-6137-1695https://orcid.org/0000-0002-6137-1695  ORCID identifier (Lisa Neuenroth)

 0000-0002-8115-3513https://orcid.org/0000-0002-8115-3513  ORCID identifier (Stephan Elmar Lehnart)

 0000-0003-1837-5233https://orcid.org/0000-0003-1837-5233  ORCID identifier (Henning Urlaub)

 0000-0002-0946-8166https://orcid.org/0000-0002-0946-8166  ORCID identifier (Christof Lenz)

 PXD049340http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD049340  Pride proteome dataset (PXD049340)

 PXD049426http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD049426  Pride proteome dataset (PXD049426)

 538https://sfb1002.med.uni-goettingen.de/production/literature/publications/538  Published Data Registry entry (CRC 1002)

 1015https://prod.mbexc.uni-goettingen.de/literature/publications/1015  Published Data Registry entry (MBExC, preprint)

 1/494https://mbexc.uni-goettingen.de/archive/1/494  Research Data Archive (supplemental material)

 03av75f26https://ror.org/03av75f26  ROR identifier (03av75f26, Max Planck Institute for Multidisciplinary Sciences)

 05xy1nn52https://ror.org/05xy1nn52  ROR identifier (05xy1nn52, Multiscale Bioimaging)

 021ft0n22https://ror.org/021ft0n22  ROR identifier (021ft0n22, University Medical Center Göttingen)

 CVCL_0045https://scicrunch.org/resolver/CVCL_0045  SciCrunch identifier (RRID:CVCL_0045, HEK293)

 SCR_018361https://scicrunch.org/resolver/SCR_018361  SciCrunch identifier (RRID:SCR_018361, Biorender)

 SCR_022865https://scicrunch.org/resolver/SCR_022865  SciCrunch identifier (RRID:SCR_022865, DIA-NN)

 SCR_002630https://scicrunch.org/resolver/SCR_002630  SciCrunch identifier (RRID:SCR_002630, GitHub)

 SCR_014485https://scicrunch.org/resolver/SCR_014485  SciCrunch identifier (RRID:SCR_014485, MaxQuant)

 SCR_001905https://scicrunch.org/resolver/SCR_001905  SciCrunch identifier (RRID:SCR_001905, R Project for Statistical Computing)

 SCR_002380https://scicrunch.org/resolver/SCR_002380  SciCrunch identifier (RRID:SCR_002380, UniProt)

 frontier...=falsehttps://www.frontiersin.org/api/v3/articles/1425190/file/Data_Sheet_1.pdf/1425190_supplementary-materials_datasheets_1_pdf/2?isPublishedV2=false  Supplemental material

 frontier...=falsehttps://www.frontiersin.org/api/v3/articles/1425190/file/Data_Sheet_2.pdf/1425190_supplementary-materials_datasheets_2_pdf/1?isPublishedV2=false  Supplemental material

 frontier...=falsehttps://www.frontiersin.org/api/v3/articles/1425190/file/Data_Sheet_3.pdf/1425190_supplementary-materials_datasheets_3_pdf/2?isPublishedV2=false  Supplemental material

 github.com/hugoagno3/mCPhttps://github.com/hugoagno3/mCP  Supplemental material (code)