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Publication
PropertyValue
Working Groups RG Cramer, RG Urlaub
SubprojectNone
Open AccessOpen Access Yes
Publication TypeJournal Article
Peer ReviewedYes
PMIDPubMed ID 38821049
DOIDOI 10.1016/j.molcel.2024.05.007
Publication Year2024
TitleCDK7 kinase activity promotes RNA polymerase II promoter escape by facilitating initiation factor release
JournalMolecular Cell
ISSN1097-2765
eISSN1097-4164
URL http://dx.doi.org/10.1016/j.molcel.2024.05.007
Journal AbbreviationMol Cell
AuthorsVelychko T, Mohammad E, Ferrer-Vicens I, Parfentev I, Werner M, Studniarek C, Schwalb B, Urlaub H, Murphy S, Cramer P, Lidschreiber M
First AuthorVelychko T
Last AuthorLidschreiber M

 External Resources

 cell.com...0400-3  Article fulltext

 gro-2/144112  GRO.publications identifier

 GSE218269  NCBI GEO Dataset (GSE218269)

 GSE133156  NCBI GEO Dataset (GSE133156, reused)

 9606  NCBI taxonomy (human, Homo sapiens)

 7227  NCBI taxonomy (fruit fly, Drosophila melanogaster)

 1247190  NCBI taxonomy (yeast, Saccharomyces cerevisiae BY4741)

 0000-0003-4087-3730  ORCID identifier (Taras Velychko)

 0009-0003-8951-1463  ORCID identifier (Eusra Mohammad)

 0000-0002-3553-0488  ORCID identifier (Ivan Ferrer-Vicens)

 0000-0002-0203-2167  ORCID identifier (Iwan Parfentev)

 0000-0002-6328-048X  ORCID identifier (Marcel Werner)

 0000-0003-0889-9949  ORCID identifier (Cecilia Studniarek)

 0000-0003-2987-2622  ORCID identifier (Björn Schwalb)

 0000-0003-1837-5233  ORCID identifier (Henning Urlaub)

 0000-0001-5454-7755  ORCID identifier (Patrick Cramer)

 PXD037842  Pride proteome dataset (PXD037842)

 1/459  Research Data Archive MBExC (supplemental material)

 03av75f26  ROR identifier (03av75f26, Max Planck Institute for Multidisciplinary Sciences)

 05xy1nn52  ROR identifier (05xy1nn52, Multiscale Bioimaging)

 021ft0n22  ROR identifier (021ft0n22, University Medical Center Göttingen)

 0524sp257  ROR identifier (0524sp257, University of Bristol)

 052gg0110  ROR identifier (052gg0110, University of Oxford)

 CVCL_0045  SciCrunch identifier (RRID:CVCL_0045, HEK293)

 CVCL_Z232  SciCrunch identifier (RRID:CVCL_Z232, Schneider 2)

 SCR_006646  SciCrunch identifier (RRID:SCR_006646, BEDTools)

 SCR_005476  SciCrunch identifier (RRID:SCR_005476, Bowtie)

 SCR_011841  SciCrunch identifier (RRID:SCR_011841, cutadapt)

 SCR_015687  SciCrunch identifier (RRID:SCR_015687, DESeq2)

 SCR_005514  SciCrunch identifier (RRID:SCR_005514, HTSeq)

 SCR_014485  SciCrunch identifier (RRID:SCR_014485, MaxQuant)

 SCR_015753  SciCrunch identifier (RRID:SCR_015753, Perseus)

 SCR_017036  SciCrunch identifier (RRID:SCR_017036, Salmon)

 SCR_002105  SciCrunch identifier (RRID:SCR_002105, Samtools)

 SCR_004463  SciCrunch identifier (RRID:SCR_004463, STAR)

 cell.com...c1.pdf  Supplemental material

 github.com/sklasfeld/DANPOS3  Supplemental material (code, reused)

 goeseek.gwdguser.de/studies/176  Supplemental material (goeseek study)

 cell.com...2.xlsx  Supplemental material (table)

 cell.com...3.xlsx  Supplemental material (table)

 cell.com...4.xlsx  Supplemental material (table)

 cell.com...5.xlsx  Supplemental material (table)

 mbexc.de...lease/  Website entry (mbexc.de)

Linked Antibodies

PIDAGTypeAntigen symbolAntibody Registry IDName
primary-1229primaryAB_2728744Pol II Antibody
primary-1461primaryPOLR2AAB_10615822Anti-RNA polymerase II subunit B1 (phospho-CTD Ser-5) Antibody, clone 3E8
primary-1462primaryMED26AB_2798656MED26 (D4B1X) Rabbit mAb
primary-1463primaryGTF2BAB_10709889TFIIB Antikörper (D-3)
primary-1464primaryGTF2E1AB_778322Anti-TFIIE alpha/GTF2E1 antibody
primary-1465primaryNELFEAB_1524076Rabbit anti-NELFE Antibody Affinity Purified
primary-1466primarySUPT5HAB_2878268SUPT5H Polyklonaler Antikörper
primary-1467primaryH2AvAB_2737370Spike-in Antibody