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Publication
PropertyValue
Working Groups RG Cramer
SubprojectNone
Open AccessOpen Access Yes
Publication TypePreprint
Peer ReviewedNo
DOIDOI 10.1101/2021.03.18.435942
Publication Year2021
TitleSequence determinants of human gene regulatory elements
JournalbioRxiv
ISSNno ISSN (NLM ID:101680187)
URL http://dx.doi.org/10.1101/2021.03.18.435942
Journal AbbreviationbioRxiv
ExtraFinal article published in Nature Genetics here: doi:10.1038/s41588-021-01009-4
AuthorsSahu B, Hartonen T, Pihlajamaa P, Wei B, Dave K, Zhu F, Kaasinen E, Lidschreiber K, Lidschreiber M, Daub CO, Cramer P, Kivioja T, Taipale J
First AuthorSahu B
Last AuthorTaipale J

 External Resources

 biorxiv....ll.pdf  Article fulltext

 ENST00000310581  Ensembl identifier (ENST00000310581)

 gro-2/100380  GRO.publications identifier

 9606  NCBI taxonomy (human, Homo sapiens)

 0000-0001-6576-5440  ORCID identifier (Biswajyoti Sahu)

 0000-0002-3295-8729  ORCID identifier (Carsten Daub)

 0000-0001-5454-7755  ORCID identifier (Patrick Cramer)

 0000-0003-4204-0951  ORCID identifier (Jussi Taipale)

 520  Published Data Registry entry (MBExC, final article)

 03e76ya46  ROR identifier (03e76ya46, Max Planck Institute for Biophysical Chemistry)

 05xy1nn52  ROR identifier (05xy1nn52, Multiscale Bioimaging)

 CVCL_0063  SciCrunch identifier (RRID:CVCL_0063, HEK293T)

 CVCL_4388  SciCrunch identifier (RRID:CVCL_4388, hTERT-RPE1)

 SCR_015058  SciCrunch identifier (RRID:SCR_015058, bcl2fastq)

 SCR_006646  SciCrunch identifier (RRID:SCR_006646, BEDTools)

 SCR_005476  SciCrunch identifier (RRID:SCR_005476, Bowtie)

 SCR_010910  SciCrunch identifier (RRID:SCR_010910, BWA)

 SCR_015482  SciCrunch identifier (RRID:SCR_015482, Encode)

 SCR_002344  SciCrunch identifier (RRID:SCR_002344, Ensembl)

 SCR_002132  SciCrunch identifier (RRID:SCR_002132, Eukaryotic Promoter Database)

 SCR_014583  SciCrunch identifier (RRID:SCR_014583, FastQC)

 SCR_005531  SciCrunch identifier (RRID:SCR_005531, FLASH)

 SCR_010881  SciCrunch identifier (RRID:SCR_010881, HOMER)

 SCR_017237  SciCrunch identifier (RRID:SCR_017237, IDR)

 SCR_018160  SciCrunch identifier (RRID:SCR_018160, liftOver)

 SCR_013291  SciCrunch identifier (RRID:SCR_013291, MACS)

 SCR_006525  SciCrunch identifier (RRID:SCR_006525, Picard)

 SCR_018664  SciCrunch identifier (RRID:SCR_018664, Preseq)

 SCR_001905  SciCrunch identifier (RRID:SCR_001905, R Project for Statistical Computing)

 SCR_002105  SciCrunch identifier (RRID:SCR_002105, Samtools)

 SCR_002577  SciCrunch identifier (RRID:SCR_002577, scikit-learn)

 SCR_016345  SciCrunch identifier (RRID:SCR_016345, TensorFlow)

 SCR_005780  SciCrunch identifier (RRID:SCR_005780, UCSC Genome Browser)

 SCR_004129  SciCrunch identifier (RRID:SCR_004129, Zenodo)

 mbexc.de...ments/  Website entry (mbexc.de)

Linked Antibodies

PIDAGTypeAntigen symbolAntibody Registry IDName
primary-0423primaryAB_737167Antibody isotype control goat IgG
primary-0640primaryH3K27acAB_2637079H3K27ac polyclonal antibody
primary-0641primaryH3K9me3AB_2616044H3K9me3 Antibody
primary-0642primaryH3K27me3AB_2753161H3K27me3 Antibody
primary-0643primaryFOXA1 AB_2104842Anti-FOXA1 antibody
primary-0644primaryp53AB_2017768p-p53 (64.Ser 315) antibody
primary-0645primaryHNF4AAB_2116913HNF-4α Antibody
primary-0646primaryCTCFAB_2086899CTCF Antibody
primary-0647primarySMC1A AB_2192467SMC1 Antibody
primary-0648primaryAB_737197normal rabbit IgG antibody
primary-0649primaryAB_737182normal mouse IgG