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Publication

Property	Value
Working Groups	RG Cramer
Subproject	None
Open Access	Yes
Publication Type	Journal Article
Peer Reviewed	Yes
PMID	35190730
DOI	10.1038/s41588-021-01009-4
Publication Year	2022
Title	Sequence determinants of human gene regulatory elements
Journal	Nature Genetics
ISSN	1061-4036
eISSN	1546-1718
URL	http://dx.doi.org/10.1038/s41588-021-01009-4
Pages	283-294
Issue	3
Volume	54
Journal Abbreviation	Nat Genet
Authors	Sahu B, Hartonen T, Pihlajamaa P, Wei B, Dave K, Zhu F, Kaasinen E, Lidschreiber K, Lidschreiber M, Daub CO, Cramer P, Kivioja T, Taipale J
First Author	Sahu B
Last Author	Taipale J

External Resources

nature.c...-4.pdfhttps://www.nature.com/articles/s41588-021-01009-4.pdf Article fulltext

ENST00000310581https://www.ensembl.org/Multi/Search/Results?q=ENST00000310581 Ensembl identifier (ENST00000310581)

gro-2/105970http://resolver.sub.uni-goettingen.de/purl?gro-2/105970 GRO.publications identifier

0000-0001-6576-5440https://orcid.org/0000-0001-6576-5440 ORCID identifier (Biswajyoti Sahu)

0000-0002-3295-8729https://orcid.org/0000-0002-3295-8729 ORCID identifier (Carsten Daub)

0000-0001-5454-7755https://orcid.org/0000-0001-5454-7755 ORCID identifier (Patrick Cramer)

0000-0003-4204-0951https://orcid.org/0000-0003-4204-0951 ORCID identifier (Jussi Taipale)

289https://prod.mbexc.uni-goettingen.de/literature/publications/289 Published Data Registry entry (MBExC, preprint)

1/255https://mbexc.uni-goettingen.de/archive/1/255 Research Data Archive (supplemental material)

03e76ya46https://ror.org/03e76ya46 ROR identifier (03e76ya46, Max Planck Institute for Biophysical Chemistry)

05xy1nn52https://ror.org/05xy1nn52 ROR identifier (05xy1nn52, Multiscale Bioimaging)

SCR_015058https://scicrunch.org/resolver/SCR_015058 SciCrunch identifier (RRID:SCR_015058, bcl2fastq)

SCR_006646https://scicrunch.org/resolver/SCR_006646 SciCrunch identifier (RRID:SCR_006646, BEDTools)

SCR_005476https://scicrunch.org/resolver/SCR_005476 SciCrunch identifier (RRID:SCR_005476, Bowtie)

SCR_010910https://scicrunch.org/resolver/SCR_010910 SciCrunch identifier (RRID:SCR_010910, BWA)

SCR_015482https://scicrunch.org/resolver/SCR_015482 SciCrunch identifier (RRID:SCR_015482, Encode)

SCR_002344https://scicrunch.org/resolver/SCR_002344 SciCrunch identifier (RRID:SCR_002344, Ensembl)

SCR_002132https://scicrunch.org/resolver/SCR_002132 SciCrunch identifier (RRID:SCR_002132, Eukaryotic Promoter Database)

SCR_014583https://scicrunch.org/resolver/SCR_014583 SciCrunch identifier (RRID:SCR_014583, FastQC)

SCR_005531https://scicrunch.org/resolver/SCR_005531 SciCrunch identifier (RRID:SCR_005531, FLASH)

SCR_010881https://scicrunch.org/resolver/SCR_010881 SciCrunch identifier (RRID:SCR_010881, HOMER)

SCR_017237https://scicrunch.org/resolver/SCR_017237 SciCrunch identifier (RRID:SCR_017237, IDR)

SCR_018160https://scicrunch.org/resolver/SCR_018160 SciCrunch identifier (RRID:SCR_018160, LiftOver)

SCR_013291https://scicrunch.org/resolver/SCR_013291 SciCrunch identifier (RRID:SCR_013291, MACS)

SCR_006525https://scicrunch.org/resolver/SCR_006525 SciCrunch identifier (RRID:SCR_006525, Picard)

SCR_018664https://scicrunch.org/resolver/SCR_018664 SciCrunch identifier (RRID:SCR_018664, Preseq)

SCR_001905https://scicrunch.org/resolver/SCR_001905 SciCrunch identifier (RRID:SCR_001905, R Project for Statistical Computing)

SCR_003485https://scicrunch.org/resolver/SCR_003485 SciCrunch identifier (RRID:SCR_003485, Reactome)

SCR_002105https://scicrunch.org/resolver/SCR_002105 SciCrunch identifier (RRID:SCR_002105, Samtools)

SCR_002577https://scicrunch.org/resolver/SCR_002577 SciCrunch identifier (RRID:SCR_002577, scikit-learn)

SCR_016345https://scicrunch.org/resolver/SCR_016345 SciCrunch identifier (RRID:SCR_016345, TensorFlow)

SCR_005780https://scicrunch.org/resolver/SCR_005780 SciCrunch identifier (RRID:SCR_005780, UCSC Genome Browser)

SCR_004129https://scicrunch.org/resolver/SCR_004129 SciCrunch identifier (RRID:SCR_004129, Zenodo)

static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41588-021-01009-4/MediaObjects/41588_2021_1009_MOESM1_ESM.pdf Supplemental material

goeseek.gwdguser.de/studies/74https://goeseek.gwdguser.de/studies/74 Supplemental material (goeseek study)

static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41588-021-01009-4/MediaObjects/41588_2021_1009_MOESM3_ESM.pdf Supplemental material (peer review)

static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41588-021-01009-4/MediaObjects/41588_2021_1009_MOESM2_ESM.pdf Supplemental material (reporting summary)

static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41588-021-01009-4/MediaObjects/41588_2021_1009_MOESM4_ESM.xlsx Supplemental material (table)

Linked Antibodies

PID	Type	Antigen symbol	Antibody Registry ID	Name
primary-0423	primary		AB_737167	Antibody isotype control goat IgG
primary-0640	primary	H3K27ac	AB_2637079	H3K27ac polyclonal antibody
primary-0641	primary	H3K9me3	AB_2616044	H3K9me3 Antibody
primary-0642	primary	H3K27me3	AB_2753161	H3K27me3 Antibody
primary-0643	primary	FOXA1	AB_2104842	Anti-FOXA1 antibody
primary-0645	primary	HNF4A	AB_2116913	HNF-4α Antibody
primary-0646	primary	CTCF	AB_2086899	CTCF Antibody
primary-0647	primary	SMC1A	AB_2192467	SMC1 Antibody
primary-0648	primary		AB_737197	normal rabbit IgG antibody
primary-0649	primary		AB_737182	normal mouse IgG
primary-1048	primary	TP53	AB_628082	Anti-p53 Antibody (DO-1)
primary-1049	primary	IRF3	AB_627826	Anti-IRF-3 Antibody (SL-12)

Technical Support: menoci@medizin.uni-goettingen.de

Department of Medical Informatics
University Medical Center Göttingen
Imprint

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External Resources

Linked Antibodies

Technical support

Links

Spokesperson

Prof. Dr. Tobias Moser

Spokesperson of Cluster of Excellence